1. Title: Chronic infection stunts macrophage heterogeneity and disrupts immune-mediated myogenesis
Species: Mouse
Cell number: 12118
PubMed ID: 30232283
Timepoint: No CTX, post-CTX (4 days)
MSKCA ID: MSKCA_001
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_001/

2. Title: Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration
Species: Mouse
Cell number: 53193
PubMed ID: 32248062
Timepoint: 0.5, 2, 3.5, 5, 10, 21 days post injury (DPI)
MSKCA ID: MSKCA_013
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_013/

3. Title: A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
Species: Human
Cell number: 22058
PubMed ID: 32624006
Timepoint: 43 to 81 years
MSKCA ID: MSKCA_028
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_028/

4. Title: Differentiation reveals latent features of aging and an energy barrier in murine myogenesis
Species: Mouse
Cell number: 25134
PubMed ID: 33910007
Timepoint: 3, 20 months
MSKCA ID: MSKCA_031
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_031/

5. Title: Direct contribution of skeletal muscle mesenchymal progenitors to bone repair
Species: Mouse
Cell number: 32984
PubMed ID: 34001878
Timepoint: d0 (uninjured), d3 and d5 post-fracture
MSKCA ID: MSKCA_032
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_032/

6. Title: Murine muscle stem cell response to perturbations of the neuromuscular junction are attenuated with aging
Species: Mouse
Cell number: 29643
PubMed ID: 34323217
Timepoint: Old Post-injury (Day 0, 3, 7), geriatric Post-injury (Day 0), 24m.myonuclei Post-injury (Day 0)
MSKCA ID: MSKCA_033
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_033/

7. Title: Uncovering the prominent role of satellite cells in paravertebral muscle development and aging by single-nucleus RNA sequencing
Species: Mouse
Cell number: 34589
PubMed ID: NA
Timepoint: embryo stage(E16.5, E17.5, and P0), young stage(M1 and M6), old stage(M12 and M24)
MSKCA ID: MSKCA_058
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_058/

8. Title: Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration
8.1 Muscle injury models in aged (20 mo) C57BL/6J mice using notexin
Species: Mouse
Cell number: 87822
PubMed ID: 34773081
Timepoint: 20 months, Uninjured (Day 0), Notexin injury (Day 1, 2 ,3.5, 5, 7)
MSKCA ID: MSKCA_037, MSKCA_038, MSKCA_039, MSKCA_040, MSKCA_041,MSKCA_042, MSKCA_043, MSKCA_044, MSKCA_045, MSKCA_046, MSKCA_047, MSKCA_048, MSKCA_049, MSKCA_050, MSKCA_051, MSKCA_052, MSKCA_053, MSKCA_054, MSKCA_055, MSKCA_056, MSKCA_057
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_071/

8. Title: Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration
8.2 Muscle injury models in adult (7 mo) C57BL/6J mice using notexin
Species: Mouse
Cell number: 6953
PubMed ID: 34773081
Timepoint: 7 months, Notexin injury (Day 2, 7)
MSKCA ID: MSKCA_035, MSKCA_036
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_074/

9. Title: Functionally heterogeneous human satellite cells identified by single cell RNA sequencing
Species: Human
Cell number: 109146
PubMed ID: 32234209
Timepoint: 20 to 84 years
MSKCA ID: MSKCA_012, MSKCA_059, MSKCA_060, MSKCA_061, MSKCA_062, MSKCA_063, MSKCA_064, MSKCA_065, MSKCA_066, MSKCA_067, MSKCA_068, MSKCA_069, MSKCA_070
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_072/

10. Title: A Human Skeletal Muscle Atlas Identifies the Trajectories of Stem and Progenitor Cells across Development and from Human Pluripotent Stem Cells
Species: Human
Cell number: 71834
PubMed ID: 32396864
Timepoint: Emb_wk_5_6, Emb_wk_6_7, Emb_wk_7_8, Fet_week_9, Fet_wk12_14, Fet_wk17_18, Juv_yr_7_11, Juv_yr_34_42, HX_wk_3, HX_wk_4, HX_wk_5, HX_wk_6, HX_wk_8 MSKCA ID: MSKCA_015, MSKCA_016, MSKCA_017, MSKCA_018, MSKCA_019, MSKCA_020, MSKCA_021, MSKCA_022, MSKCA_023, MSKCA_024, MSKCA_025, MSKCA_026, MSKCA_027
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_073/

11. Title: Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration
Species: Mouse
Cell number: 52361
PubMed ID: 32160558
Timepoint: 4 months No injury (Day 0), Notexin (Day 2, 5, 7); 5-7 months No injury (Day 0); 7 months Notexin (Day 2)
MSKCA ID: MSKCA_007, MSKCA_008, MSKCA_009, MSKCA_010, MSKCA_011
View cell atlas in ShinyCell https://lifeomics.shinyapps.io/MSKCA_075/